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FindUBUsingMinMaxD v1

Warning

FindUBUsingMinMaxD is deprecated (on 2013-06-03). Use FindUBUsingFFT instead.

Summary

Calculate the UB matrix from a peaks workspace, given min(a,b,c) and max(a,b,c).

See Also

SetUB, FindUBUsingFFT, FindUBUsingIndexedPeaks, FindUBUsingLatticeParameters

Properties

Name	Direction	Type	Default	Description
PeaksWorkspace	InOut	IPeaksWorkspace	Mandatory	Input Peaks Workspace
MinD	Input	number	Mandatory	Lower Bound on Lattice Parameters a, b, c
MaxD	Input	number	Mandatory	Upper Bound on Lattice Parameters a, b, c
NumInitial	Input	number	20	Number of Peaks to Use on First Pass(20)
Tolerance	Input	number	0.15	Indexing Tolerance (0.15)

Description

Given a set of peaks, and given a range of possible a,b,c values, this algorithm will attempt to find a UB matrix, corresponding to the Niggli reduced cell, that fits the data. The algorithm searches over a range of possible directions and unit cell lengths for directions and lengths that match plane normals and plane spacings in reciprocal space. It then chooses three of these vectors with the shortest lengths that are linearly independent and that are separated by at least a minimum angle. An initial UB matrix is formed using these three vectors and the resulting UB matrix is optimized using a least squares method. Finally, starting from this matrix, a matrix corresponding to the Niggli reduced cell is calculated and returned as the UB matrix. If the specified peaks are accurate and belong to a single crystal, this method should produce some UB matrix that indexes the peaks. However, other software will usually be needed to adjust this UB to match a desired conventional cell.

Usage

Example:

ws=LoadIsawPeaks("TOPAZ_3007.peaks")
print("After LoadIsawPeaks does the workspace have an orientedLattice: %s" % ws.sample().hasOrientedLattice())

FindUBUsingMinMaxD(ws,MinD=8.0,MaxD=13.0)
print("After FindUBUsingMinMaxD does the workspace have an orientedLattice: %s" % ws.sample().hasOrientedLattice())

print(ws.sample().getOrientedLattice().getUB())

Output:

After LoadIsawPeaks does the workspace have an orientedLattice: False
After FindUBUsingMinMaxD does the workspace have an orientedLattice: True
[[ 0.01223576  0.00480107  0.08604016]
 [-0.11654506  0.00178069 -0.00458823]
 [-0.02737294 -0.08973552 -0.02525994]]

Categories: AlgorithmIndex | Crystal\UBMatrix | Deprecated

Source

C++ header: FindUBUsingMinMaxD.h

C++ source: FindUBUsingMinMaxD.cpp