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EnggSaveSinglePeakFitResultsToHDF5 v1

../_images/EnggSaveSinglePeakFitResultsToHDF5-v1_dlg.png

EnggSaveSinglePeakFitResultsToHDF5 dialog.

Summary

Save a table workspace containing fit parameters from EnggFitPeaks to an HDF5 file, indexed by bank ID

Properties

Name Direction Type Default Description
InputWorkspaces Input str list   Table workspaces containing fit parameters to save
BankIDs Input long list   The bank ID of each input workspace, in order
RunNumbers Input long list   The run number of each input workspace, in order
Filename Input string Mandatory HDF5 file to save to. Allowed extensions: [‘.hdf5’, ‘.h5’, ‘.hdf’]

Description

Exports the results of an EnggFitPeaks fit to an HDF5 file indexed by bank ID. If multiple sets of fit results are provided, then the file is divided into sub-groups for each run number, with the Run Number groups indexed further by bank ID. The results go in a sub-group of the Bank group called Single Peak Fitting. This group contains one dataset, which is a table of the fit parameters for every peak

Obtaining fit results for banks 1 and 2 of run 123456 and then saving them with this algorithm would yield the following file structure:

../_images/EnggSaveSinglePeakFitResultsToHDF5SingleRunHierarchy.png

Obtaining fit results for banks 1 and 2 of run 123456 and bank 1 of 123457, and then saving them with this algorithm, would yield the following file structure:

../_images/EnggSaveSinglePeakFitResultsToHDF5MultiRunHierarchy.png

Fit Parameters

The fit function used in EnggFitPeaks is Back2BackExponential, so the input table workspace must contain values for the following parameters: ["dSpacing", "A0", "A0_Err", "A1", "A1_Err", "X0", "X0_Err", "A", "A_Err", "B", "B_Err", "S", "S_Err", "I", "I_Err", "Chi"]. Conveniently, this is exactly what you get out of EnggFitPeaks.

Usage

Ordinarily, we’d get our peak parameters table from EnggFitPeaks, but we just mock one up here. See EnggFitPeaks documentation for how to generate this table.

Example - Export fit params to a new HDF5 file:

import h5py
import os

peaks = CreateEmptyTableWorkspace()

fit_param_headers = ["dSpacing", "A0", "A0_Err", "A1", "A1_Err", "X0", "X0_Err",
                     "A", "A_Err", "B", "B_Err", "S", "S_Err", "I", "I_Err", "Chi"]

[peaks.addColumn("double", header) for header in fit_param_headers]

for i in range(3):
    peaks.addRow([(i + 1.0) / (j + 1) for j in range(len(fit_param_headers))])

output_filename = os.path.join(config["defaultsave.directory"],
                               "EnggSaveSinglePeakFitResultsToHDF5DocTest.hdf5")

EnggSaveSinglePeakFitResultsToHDF5(InputWorkspaces=[peaks],
                                   Filename=output_filename,
                                   BankIDs=[1])

with h5py.File(output_filename, "r") as f:
    bank_group = f["Bank 1"]
    peaks_dataset = bank_group["Single Peak Fitting"]
    print("Peaks dataset has {} rows, for our 3 peaks".format(len(peaks_dataset)))
    print("First peak is at D spacing {}".format(peaks_dataset[0]["dSpacing"]))
    print("Third peak X0 = {}".format(peaks_dataset[2]["X0"]))

Output:

Peaks dataset has 3 rows, for our 3 peaks
First peak is at D spacing 1.0
Third peak X0 = 0.5

Categories: AlgorithmIndex | DataHandling

Source

Python: EnggSaveSinglePeakFitResultsToHDF5.py (last modified: 2020-03-27)